Thomas Lab
Chemical Biology and Peptide Design

Useful Bioinformatic Tools

Oligo-Tools Mass calculations for peptides, PNA and DNA
Blast Basic Local Alignment Search Tool (sequence alignments and sequence similarities)
PDB RSCB Protein Data Bank (information portal to biological macromolecular structures)
CC+ Coiled-Coil Database
CC Builder Coiled-Coil model builder
Socket Locates Knobs-into-Holes packing between α-helices in pdb structures
WebLogo Creates sequence logos
DrawCoil Program for producing coiled-coil helical wheel diagrams
ROSIE Easy-to-use web interface for selected Rosetta protocols
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